Alle Stellen
Meaningful work that directly contributes to patient care in the growing field of precision medicine. The opportunity to work with state-of-the-art technologies in a professional clinical environment with high quality standards.
Tasks
- Development, validation, maintenance and troubleshooting of clinical NGS workflows for targeted panels, WES and WGS, including variant calling, annotation, quality control and data transfer
- Automation and optimisation of reproducible bioinformatics workflows using scripts, workflow management systems and containerised environments
- Development and maintenance of databases, quality metrics and monitoring tools for sequencing performance, workflows and metadata
- Further development of applications and user interfaces to facilitate access to sequencing data, quality metrics and variant annotations
- Integration and optimisation of laboratory workflows in sLIMS and ensuring data exchange between laboratory systems, instruments and bioinformatics pipelines in close interdisciplinary collaboration
Requirements
- Master's degree in Bioinformatics, Computational Biology, Computer Science or a related field, or equivalent practical experience
- Good practical knowledge of Python, Linux and shell scripting
- Basic understanding of high-throughput sequencing and associated analysis workflows
- Enjoyment of complex technical challenges and a structured, reliable and independent way of working
- Eagerness to learn and motivation to further develop expertise in clinical bioinformatics and NGS workflow engineering
- Good communication and teamwork skills
- Good command of German and English
- An advantage: experience with SQL, Nextflow, Snakemake, HPC environments, NGS analysis tools, Java or Groovy, clinical diagnostic workflows, Docker or Singularity
Benefits
- Meaningful work that directly contributes to patient care in the growing field of precision medicine
- The opportunity to work with state-of-the-art technologies in a professional clinical environment with high quality standards
- An interdisciplinary and dynamic team with an open and collaborative culture
- Structured onboarding, professional guidance and opportunities to contribute new ideas and develop personally and professionally
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Über uns
Insel Gruppe AG ist eine Schweizer Spitalgruppe und betreibt mehrere Spitäler sowie medizinische Zentren im Kanton Bern. Das Unternehmen erbringt Leistungen in der stationären und ambulanten medizinischen Versorgung und ist zudem in den Bereichen Lehre, Forschung und Ausbildung tätig. Zur Gruppe gehören unter anderem das Inselspital, Universitätsspital Bern, sowie weitere Spitäler und ein Rehazentrum. Die Insel Gruppe deckt ein breites Spektrum an medizinischen Fachgebieten ab und stellt die Gesundheitsversorgung in der Region sicher.
Das Team
An interdisciplinary and dynamic team with an open and collaborative culture.